PhenoGram Plot

	Input file
	Title
	Genome**	human GRCh38/hg38 human GRCh37/hg19 mouse drosophila other
	Genome file
	Phenotype spacing	Proximity algorithm Equal distance along chromosome Standard algorithm
	Phenotype color	Exhaustive search colors Grouped colors Grayscale File for specifying colors
	Color specification file
	Image format	PNG JPG PDF
	Chromosome only?
+	Zoom Options
	Chromosome
	Start bp
	End bp
+	Additional Options
	Skip empty chromosomes?
	Larger font?
	Annotation?
	Cytobands**	none human GRCh38/hg38 human GRCh37/hg19 mouse other
	Cytoband file
	Group shape file
	Phenotype size	medium large small
	Outline circles?
	Transparent lines?
	Omit chromosome lines?
	Thinner lines?
	Thicker chromosomes?

** We are in the process of adding model organisms and these features are currently in beta