PheWAS-View examples

PheWAS-View created the image below using the PheWAS-View sample file provided. The settings used:

• Input file: phewas-view-input.txt
• Title: Basic PheWAS-View Plot
• Red line p value: 0.01
• P value highlight threshold: 0.1
• Format: PNG

PheWAS-View created the image below using the PheWAS-View extended sample file to produce a plot that displays the p values and direction of effect for a single SNP and multiple groups across different phenotypes. The settings used:

• Input file: phewas-view-in-extended.txt
• Group file: phewas-view-group.txt
• Title: Single SNP results with multiple groups
• SNP Name: rs12678919
• Red line p value: 0.001
• Format: PNG
• Colors by group?: Checked
• Show direction of effect?: Checked
• Direction of effect?: Checked

PheWAS-View created the image below using the PheWAS-View extended sample file to produce a plot that displays the p values and direction of effect for a single SNP and multiple groups across different phenotypes. The settings used:

• Input file: phewas-view-in-extended.txt
• Group file: phewas-view-group.txt
• Title: Single SNP results with multiple groups
• Red line p value: 0.001
• P value highlight threshold: 0.001
• Format: PNG
• Direction of effect?: Checked
• Rotated?: Checked
• Sample size track?: Checked

PheWAS-View Sun examples

PheWAS-View created the image below using the PheWAS-View sample file provided. The settings used:

• Input file: phewas-view-input.txt
• Title: SNP Sun Plot
• P value threshold: 0.4
• SNP Name: rs6855911
• Format: PNG