Synthesis-View Plot

	Input file
	Optional files
	Phenotype Summary
	Gene Summary
	LD
	Options log
	Abbreviations
	SNP source
	Image format	PNG jpg PDF
	Title
	General plot features
	Rotate?
	Larger font?
	Grayscale?
	Axis scaling	maximum cleaner
	Additional SNP locations?
	Offset overlapping points?
	Phenotype summary plot name
	Odds ratio and forest plot options
	Produce forest plot?
	Minimum forest plot x-axis at zero?
	Plot case/control totals	none combined split
	Plot case/control CAF	none combined split
	Sig or large
	Draw legend?
	P-Value options
	Include p-value track?
	Plot p-values as circles?
	Draw line at this p-value
	Maximum y-axis setting for p-value track
	Highlighted group
	Other options
	Include direction of effect?
	Effect label	beta Effect Size
	LD D-prime track?
	LD R-squared track?
	SNP position track?
	Power track?
	Interaction plot?