Synthesis-View examples

Synthesis-View created the image below using the Synthesis-View sample file provided. The settings used:

• Input file: sample-synth-view.txt
• Title: Sample
• Format: PNG

Synthesis-View created the image below using the Synthesis-View sample SNP color file provided. The settings used:

• Input file: sample-synth-view-snpcolor.txt
• Title: SNP Names With User-Specified Colors
• Format: PNG
• Additional SNP locations?: Checked
• Include p-value track?: Checked
• Include direction of effect?: Checked
• SNP position track?: Checked

Synthesis-View created the image below using the Synthesis-View sample file provided. The settings used:

• Input file: sample-synth-view.txt
• LD file: sample-ld.txt
• Title: Sample
• Draw line at this p-value: 0.0001
• Format: PNG
• LD D-prime track?: Checked

Synthesis-View created the image below using the Synthesis-View sample file provided. The settings used:

• Input file: sample-forest.txt
• Title: Sample Forest
• Format: PNG
• Produce forest plot?: Checked
• Minimum forest plot x-axis at zero?: Checked
• Plot significant odds ratio larger?: Checked

Synthesis-View created the interaction plot image below using the Synthesis-View sample interaction and Synthesis-View SNP source files provided. The settings used:

• Input file: sample-synth-interaction.txt
• SNP source file: sample-source.txt
• Title: Sample Interaction
• Format: PNG
• Rotate?: Checked
• Interaction plot?: Checked
• Larger font?: Checked